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Ribosome Quality Control and Ribosome Release From the ER are Facilitated by Ufmylation
Ribosome Quality Control and Ribosome Release From the ER are Facilitated by Ufmylation
Ribosome Quality Control and Ribosome Release From the ER are Facilitated by Ufmylation

상세정보

자료유형  
 학위논문 서양
최종처리일시  
20250211153053
ISBN  
9798346384052
DDC  
610
저자명  
Gumbin, Samantha Claire.
서명/저자  
Ribosome Quality Control and Ribosome Release From the ER are Facilitated by Ufmylation
발행사항  
[Sl] : Stanford University, 2024
발행사항  
Ann Arbor : ProQuest Dissertations & Theses, 2024
형태사항  
129 p
주기사항  
Source: Dissertations Abstracts International, Volume: 86-05, Section: B.
주기사항  
Advisor: Kopito, Ron.
학위논문주기  
Thesis (Ph.D.)--Stanford University, 2024.
초록/해제  
요약Ribosomes that stall while translating cytosolic proteins are incapacitated by incomplete nascent chains, termed "arrest peptides" (APs) that are destroyed by the ubiquitin proteasome system (UPS) via a process known as the ribosome-associated quality control (RQC) pathway. By contrast, APs on ribosomes that stall while translocating secretory proteins into the endoplasmic reticulum (ER-APs) are shielded from cytosol by the ER membrane and the tightly sealed ribosome-translocon junction. How this junction is breached to enable access of cytosolic UPS machinery and 26S proteasomes to translocon and ribosome obstructing ER-APs was not known. Here, we show that UPS and RQC dependent degradation of ER-APs strictly requires conjugation of the ubiquitin-like protein UFM1 to 60S ribosomal subunits at the ribosome-translocon junction. UFM1 is reversibly conjugated to a ribosomal protein - uL24/RPL26 - on 60S ribosomal particles at the ER membrane. This substrate selectivity is conferred by the UFM1 E3 ligase (E3UFM1), a stoichiometric complex of three proteins: UFL1, CDK5RAP3, and DDRGK1, that is anchored to the cytosolic face of the ER membrane. Still, the mechanism of how UFM1 conjugation facilitates rescue of 60S subunits that are released upon RQC mediated splitting of ribosomes at the ER was unknown. We show that ribosome UFMylation occurs exclusively on free 60S ribosomal subunits and present sequential cryo-electron microscopic snapshots of the heterotrimeric E3UFM1 engaging its substrate, uL24. After catalyzing UFM1 transfer, E3UFM1binds stably to its product, UFMylated 60S, forming a C-shaped clamp that extends all the way around the 60S from the tRNA binding sites to the polypeptide tunnel exit. Biochemical data shows that UFM1 conjugation is essential for timely release of 60S from SEC61 translocons. This work resolves a long-standing, unresolved mystery in cell biology, namely how 60S subunits are released from the ER following termination of co-translational translocation.
일반주제명  
Cytoplasm
일반주제명  
CRISPR
일반주제명  
Endoplasmic reticulum
일반주제명  
Ribonucleic acid--RNA
일반주제명  
Yeast
일반주제명  
Polypeptides
일반주제명  
Transfer RNA
일반주제명  
Transcription factors
일반주제명  
Bioengineering
일반주제명  
Bioinformatics
일반주제명  
Cellular biology
일반주제명  
Genetics
기타저자  
Stanford University.
기본자료저록  
Dissertations Abstracts International. 86-05B.
전자적 위치 및 접속  
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MARC

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■040    ▼aMiAaPQ▼cMiAaPQ
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■1001  ▼aGumbin,  Samantha  Claire.
■24510▼aRibosome  Quality  Control  and  Ribosome  Release  From  the  ER  are  Facilitated  by  Ufmylation
■260    ▼a[Sl]▼bStanford  University▼c2024
■260  1▼aAnn  Arbor▼bProQuest  Dissertations  &  Theses▼c2024
■300    ▼a129  p
■500    ▼aSource:  Dissertations  Abstracts  International,  Volume:  86-05,  Section:  B.
■500    ▼aAdvisor:  Kopito,  Ron.
■5021  ▼aThesis  (Ph.D.)--Stanford  University,  2024.
■520    ▼aRibosomes  that  stall  while  translating  cytosolic  proteins  are  incapacitated  by  incomplete  nascent  chains,  termed  "arrest  peptides"  (APs)  that  are  destroyed  by  the  ubiquitin  proteasome  system  (UPS)  via  a  process  known  as  the  ribosome-associated  quality  control  (RQC)  pathway.  By  contrast,  APs  on  ribosomes  that  stall  while  translocating  secretory  proteins  into  the  endoplasmic  reticulum  (ER-APs)  are  shielded  from  cytosol  by  the  ER  membrane  and  the  tightly  sealed  ribosome-translocon  junction.  How  this  junction  is  breached  to  enable  access  of  cytosolic  UPS  machinery  and  26S  proteasomes  to  translocon  and  ribosome  obstructing  ER-APs  was  not  known.  Here,  we  show  that  UPS  and  RQC  dependent  degradation  of  ER-APs  strictly  requires  conjugation  of  the  ubiquitin-like  protein  UFM1  to  60S  ribosomal  subunits  at  the  ribosome-translocon  junction.  UFM1  is  reversibly  conjugated  to  a  ribosomal  protein  -  uL24/RPL26  -  on  60S  ribosomal  particles  at  the  ER  membrane.  This  substrate  selectivity  is  conferred  by  the  UFM1  E3  ligase  (E3UFM1),  a  stoichiometric  complex  of  three  proteins:  UFL1,  CDK5RAP3,  and  DDRGK1,  that  is  anchored  to  the  cytosolic  face  of  the  ER  membrane.  Still,  the  mechanism  of  how  UFM1  conjugation  facilitates  rescue  of  60S  subunits  that  are  released  upon  RQC  mediated  splitting  of  ribosomes  at  the  ER  was  unknown.  We  show  that  ribosome  UFMylation  occurs  exclusively  on  free  60S  ribosomal  subunits  and  present  sequential  cryo-electron  microscopic  snapshots  of  the  heterotrimeric  E3UFM1  engaging  its  substrate,  uL24.  After  catalyzing  UFM1  transfer,  E3UFM1binds  stably  to  its  product,  UFMylated  60S,  forming  a  C-shaped  clamp  that  extends  all  the  way  around  the  60S  from  the  tRNA  binding  sites  to  the  polypeptide  tunnel  exit.  Biochemical  data  shows  that  UFM1  conjugation  is  essential  for  timely  release  of  60S  from  SEC61  translocons.  This  work  resolves  a  long-standing,  unresolved  mystery  in  cell  biology,  namely  how  60S  subunits  are  released  from  the  ER  following  termination  of  co-translational  translocation.
■590    ▼aSchool  code:  0212.
■650  4▼aCytoplasm
■650  4▼aCRISPR
■650  4▼aEndoplasmic  reticulum
■650  4▼aRibonucleic  acid--RNA
■650  4▼aYeast
■650  4▼aPolypeptides
■650  4▼aTransfer  RNA
■650  4▼aTranscription  factors
■650  4▼aBioengineering
■650  4▼aBioinformatics
■650  4▼aCellular  biology
■650  4▼aGenetics
■690    ▼a0202
■690    ▼a0715
■690    ▼a0379
■690    ▼a0369
■71020▼aStanford  University.
■7730  ▼tDissertations  Abstracts  International▼g86-05B.
■790    ▼a0212
■791    ▼aPh.D.
■792    ▼a2024
■793    ▼aEnglish
■85640▼uhttp://www.riss.kr/pdu/ddodLink.do?id=T17164835▼nKERIS▼z이  자료의  원문은  한국교육학술정보원에서  제공합니다.

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