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Ribosome Quality Control and Ribosome Release From the ER are Facilitated by Ufmylation
Ribosome Quality Control and Ribosome Release From the ER are Facilitated by Ufmylation
상세정보
- 자료유형
- 학위논문 서양
- 최종처리일시
- 20250211153053
- ISBN
- 9798346384052
- DDC
- 610
- 서명/저자
- Ribosome Quality Control and Ribosome Release From the ER are Facilitated by Ufmylation
- 발행사항
- [Sl] : Stanford University, 2024
- 발행사항
- Ann Arbor : ProQuest Dissertations & Theses, 2024
- 형태사항
- 129 p
- 주기사항
- Source: Dissertations Abstracts International, Volume: 86-05, Section: B.
- 주기사항
- Advisor: Kopito, Ron.
- 학위논문주기
- Thesis (Ph.D.)--Stanford University, 2024.
- 초록/해제
- 요약Ribosomes that stall while translating cytosolic proteins are incapacitated by incomplete nascent chains, termed "arrest peptides" (APs) that are destroyed by the ubiquitin proteasome system (UPS) via a process known as the ribosome-associated quality control (RQC) pathway. By contrast, APs on ribosomes that stall while translocating secretory proteins into the endoplasmic reticulum (ER-APs) are shielded from cytosol by the ER membrane and the tightly sealed ribosome-translocon junction. How this junction is breached to enable access of cytosolic UPS machinery and 26S proteasomes to translocon and ribosome obstructing ER-APs was not known. Here, we show that UPS and RQC dependent degradation of ER-APs strictly requires conjugation of the ubiquitin-like protein UFM1 to 60S ribosomal subunits at the ribosome-translocon junction. UFM1 is reversibly conjugated to a ribosomal protein - uL24/RPL26 - on 60S ribosomal particles at the ER membrane. This substrate selectivity is conferred by the UFM1 E3 ligase (E3UFM1), a stoichiometric complex of three proteins: UFL1, CDK5RAP3, and DDRGK1, that is anchored to the cytosolic face of the ER membrane. Still, the mechanism of how UFM1 conjugation facilitates rescue of 60S subunits that are released upon RQC mediated splitting of ribosomes at the ER was unknown. We show that ribosome UFMylation occurs exclusively on free 60S ribosomal subunits and present sequential cryo-electron microscopic snapshots of the heterotrimeric E3UFM1 engaging its substrate, uL24. After catalyzing UFM1 transfer, E3UFM1binds stably to its product, UFMylated 60S, forming a C-shaped clamp that extends all the way around the 60S from the tRNA binding sites to the polypeptide tunnel exit. Biochemical data shows that UFM1 conjugation is essential for timely release of 60S from SEC61 translocons. This work resolves a long-standing, unresolved mystery in cell biology, namely how 60S subunits are released from the ER following termination of co-translational translocation.
- 일반주제명
- Cytoplasm
- 일반주제명
- CRISPR
- 일반주제명
- Endoplasmic reticulum
- 일반주제명
- Ribonucleic acid--RNA
- 일반주제명
- Yeast
- 일반주제명
- Polypeptides
- 일반주제명
- Transfer RNA
- 일반주제명
- Transcription factors
- 일반주제명
- Bioengineering
- 일반주제명
- Bioinformatics
- 일반주제명
- Cellular biology
- 일반주제명
- Genetics
- 기타저자
- Stanford University.
- 기본자료저록
- Dissertations Abstracts International. 86-05B.
- 전자적 위치 및 접속
- 로그인 후 원문을 볼 수 있습니다.
MARC
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■020 ▼a9798346384052
■035 ▼a(MiAaPQ)AAI31643361
■035 ▼a(MiAaPQ)Stanfordqp222jr1973
■040 ▼aMiAaPQ▼cMiAaPQ
■0820 ▼a610
■1001 ▼aGumbin, Samantha Claire.
■24510▼aRibosome Quality Control and Ribosome Release From the ER are Facilitated by Ufmylation
■260 ▼a[Sl]▼bStanford University▼c2024
■260 1▼aAnn Arbor▼bProQuest Dissertations & Theses▼c2024
■300 ▼a129 p
■500 ▼aSource: Dissertations Abstracts International, Volume: 86-05, Section: B.
■500 ▼aAdvisor: Kopito, Ron.
■5021 ▼aThesis (Ph.D.)--Stanford University, 2024.
■520 ▼aRibosomes that stall while translating cytosolic proteins are incapacitated by incomplete nascent chains, termed "arrest peptides" (APs) that are destroyed by the ubiquitin proteasome system (UPS) via a process known as the ribosome-associated quality control (RQC) pathway. By contrast, APs on ribosomes that stall while translocating secretory proteins into the endoplasmic reticulum (ER-APs) are shielded from cytosol by the ER membrane and the tightly sealed ribosome-translocon junction. How this junction is breached to enable access of cytosolic UPS machinery and 26S proteasomes to translocon and ribosome obstructing ER-APs was not known. Here, we show that UPS and RQC dependent degradation of ER-APs strictly requires conjugation of the ubiquitin-like protein UFM1 to 60S ribosomal subunits at the ribosome-translocon junction. UFM1 is reversibly conjugated to a ribosomal protein - uL24/RPL26 - on 60S ribosomal particles at the ER membrane. This substrate selectivity is conferred by the UFM1 E3 ligase (E3UFM1), a stoichiometric complex of three proteins: UFL1, CDK5RAP3, and DDRGK1, that is anchored to the cytosolic face of the ER membrane. Still, the mechanism of how UFM1 conjugation facilitates rescue of 60S subunits that are released upon RQC mediated splitting of ribosomes at the ER was unknown. We show that ribosome UFMylation occurs exclusively on free 60S ribosomal subunits and present sequential cryo-electron microscopic snapshots of the heterotrimeric E3UFM1 engaging its substrate, uL24. After catalyzing UFM1 transfer, E3UFM1binds stably to its product, UFMylated 60S, forming a C-shaped clamp that extends all the way around the 60S from the tRNA binding sites to the polypeptide tunnel exit. Biochemical data shows that UFM1 conjugation is essential for timely release of 60S from SEC61 translocons. This work resolves a long-standing, unresolved mystery in cell biology, namely how 60S subunits are released from the ER following termination of co-translational translocation.
■590 ▼aSchool code: 0212.
■650 4▼aCytoplasm
■650 4▼aCRISPR
■650 4▼aEndoplasmic reticulum
■650 4▼aRibonucleic acid--RNA
■650 4▼aYeast
■650 4▼aPolypeptides
■650 4▼aTransfer RNA
■650 4▼aTranscription factors
■650 4▼aBioengineering
■650 4▼aBioinformatics
■650 4▼aCellular biology
■650 4▼aGenetics
■690 ▼a0202
■690 ▼a0715
■690 ▼a0379
■690 ▼a0369
■71020▼aStanford University.
■7730 ▼tDissertations Abstracts International▼g86-05B.
■790 ▼a0212
■791 ▼aPh.D.
■792 ▼a2024
■793 ▼aEnglish
■85640▼uhttp://www.riss.kr/pdu/ddodLink.do?id=T17164835▼nKERIS▼z이 자료의 원문은 한국교육학술정보원에서 제공합니다.


