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Spectroscopic and Computational Insights Into the Chemistry and Biochemistry of Coenzyme B12
Spectroscopic and Computational Insights Into the Chemistry and Biochemistry of Coenzyme B...
Spectroscopic and Computational Insights Into the Chemistry and Biochemistry of Coenzyme B12

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자료유형  
 학위논문 서양
최종처리일시  
20260202105116
ISBN  
9798290968735
DDC  
546
저자명  
Hall, Ryan L.
서명/저자  
Spectroscopic and Computational Insights Into the Chemistry and Biochemistry of Coenzyme B12
발행사항  
[Sl] : The University of Wisconsin - Madison, 2025
발행사항  
Ann Arbor : ProQuest Dissertations & Theses, 2025
형태사항  
153 p
주기사항  
Source: Dissertations Abstracts International, Volume: 87-02, Section: B.
주기사항  
Advisor: Brunold, Thomas C.
학위논문주기  
Thesis (Ph.D.)--The University of Wisconsin - Madison, 2025.
초록/해제  
요약Coenzyme B12, or adenosylcobalamin (AdoCbl), plays a central role in a range of biochemical transformations that often involve radical-based or organometallic reaction pathways. The research outlined in this thesis integrated spectroscopic and computational approaches to investigate the structure, reactivity, and electronic properties of AdoCbl and its biologically relevant derivatives in three distinct, but thematically related contexts. The first project focused on AdoCbl as a cofactor in the bacterial enzyme ethanolamine ammonia-lyase (EAL). Using electronic absorption (Abs) spectroscopy and density functional theory (DFT) calculations, we examined the EAL ternary (AdoCbl/EAL/substrate) complex to probe Co-C bond weakening. Our results support a model in which substrate binding induces a change in the active site H-bonding network that lowers the Co-C bond dissociation energy, thereby priming AdoCbl for homolytic cleavage. The second project was aimed at characterizing the spectral properties of halocobalamins (XCbls), a series in which halide ions (X = F, Cl, Br, I) serve as upper axial ligands of Co3+Cbl. Experimental Abs and CD spectra were recorded and analyzed in the framework of time-dependent DFT calculations. Clear trends in the electronic transitions and across the halide series were observed, revealing systematic shifts attributable to halide identity and Co-X bond length. These findings enhance our understanding of axial ligand effects on corrinoid geometric and electronic structures. In the third study, we investigated the behavior of the AdoCbl-precursor aquacobalamin (H2OCbl+) under reducing, acidic conditions. Reduction of H2OCbl+ in the presence of acid leads to the evolution of hydrogen gas. While a cobalt-hydride intermediate was initially hypothesized, Abs and circular dichroism (CD) spectroscopic studies revealed that the major steady-state product more closely resembles a Co1+Cbl species rather than a Co3+-hydride. This unexpected outcome challenges previous mechanistic assumptions and provides new insights into cobalamin redox chemistry in acidic environments. Together, these studies offer a multifaceted view of coenzyme B12 chemistry and biochemistry, spanning enzyme catalysis, molecular catalysis for H2(g) production, and spectroscopic changes resulting from halide coordination.
일반주제명  
Inorganic chemistry
일반주제명  
Chemistry
일반주제명  
Biochemistry
키워드  
Adenosylcobalamin
키워드  
Coenzyme B12
키워드  
Ethanolamine ammonia-lyase
키워드  
Density functional theory
기타저자  
The University of Wisconsin - Madison Chemistry
기본자료저록  
Dissertations Abstracts International. 87-02B.
전자적 위치 및 접속  
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MARC

 008260126s2025        us                              c    eng  d
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■006m          o    d                
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■020    ▼a9798290968735
■035    ▼a(MiAaPQ)AAI32237548
■040    ▼aMiAaPQ▼cMiAaPQ
■0820  ▼a546
■1001  ▼aHall,  Ryan  L.
■24510▼aSpectroscopic  and  Computational  Insights  Into  the  Chemistry  and  Biochemistry  of  Coenzyme  B12
■260    ▼a[Sl]▼bThe  University  of  Wisconsin  -  Madison▼c2025
■260  1▼aAnn  Arbor▼bProQuest  Dissertations  &  Theses▼c2025
■300    ▼a153  p
■500    ▼aSource:  Dissertations  Abstracts  International,  Volume:  87-02,  Section:  B.
■500    ▼aAdvisor:  Brunold,  Thomas  C.
■5021  ▼aThesis  (Ph.D.)--The  University  of  Wisconsin  -  Madison,  2025.
■520    ▼aCoenzyme  B12,  or  adenosylcobalamin  (AdoCbl),  plays  a  central  role  in  a  range  of  biochemical  transformations  that  often  involve  radical-based  or  organometallic  reaction  pathways.  The  research  outlined  in  this  thesis  integrated  spectroscopic  and  computational  approaches  to  investigate  the  structure,  reactivity,  and  electronic  properties  of  AdoCbl  and  its  biologically  relevant  derivatives  in  three  distinct,  but  thematically  related  contexts.  The  first  project  focused  on  AdoCbl  as  a  cofactor  in  the  bacterial  enzyme  ethanolamine  ammonia-lyase  (EAL).  Using  electronic  absorption  (Abs)  spectroscopy  and  density  functional  theory  (DFT)  calculations,  we  examined  the  EAL  ternary  (AdoCbl/EAL/substrate)  complex  to  probe  Co-C  bond  weakening.  Our  results  support  a  model  in  which  substrate  binding  induces  a  change  in  the  active  site  H-bonding  network  that  lowers  the  Co-C  bond  dissociation  energy,  thereby  priming  AdoCbl  for  homolytic  cleavage.  The  second  project  was  aimed  at  characterizing  the  spectral  properties  of  halocobalamins  (XCbls),  a  series  in  which  halide  ions  (X  =  F,  Cl,  Br,  I)  serve  as  upper  axial  ligands  of  Co3+Cbl.  Experimental  Abs  and  CD  spectra  were  recorded  and  analyzed  in  the  framework  of  time-dependent  DFT  calculations.  Clear  trends  in  the  electronic  transitions  and  across  the  halide  series  were  observed,  revealing  systematic  shifts  attributable  to  halide  identity  and  Co-X  bond  length.  These  findings  enhance  our  understanding  of  axial  ligand  effects  on  corrinoid  geometric  and  electronic  structures.  In  the  third  study,  we  investigated  the  behavior  of  the  AdoCbl-precursor  aquacobalamin  (H2OCbl+)  under  reducing,  acidic  conditions.  Reduction  of  H2OCbl+  in  the  presence  of  acid  leads  to  the  evolution  of  hydrogen  gas.  While  a  cobalt-hydride  intermediate  was  initially  hypothesized,  Abs  and  circular  dichroism  (CD)  spectroscopic  studies  revealed  that  the  major  steady-state  product  more  closely  resembles  a  Co1+Cbl  species  rather  than  a  Co3+-hydride.  This  unexpected  outcome  challenges  previous  mechanistic  assumptions  and  provides  new  insights  into  cobalamin  redox  chemistry  in  acidic  environments.  Together,  these  studies  offer  a  multifaceted  view  of  coenzyme  B12  chemistry  and  biochemistry,  spanning  enzyme  catalysis,  molecular  catalysis  for  H2(g)  production,  and  spectroscopic  changes  resulting  from  halide  coordination.
■590    ▼aSchool  code:  0262.
■650  4▼aInorganic  chemistry
■650  4▼aChemistry
■650  4▼aBiochemistry
■653    ▼aAdenosylcobalamin
■653    ▼aCoenzyme  B12
■653    ▼aEthanolamine  ammonia-lyase
■653    ▼aDensity  functional  theory
■690    ▼a0488
■690    ▼a0487
■690    ▼a0485
■71020▼aThe  University  of  Wisconsin  -  Madison▼bChemistry.
■7730  ▼tDissertations  Abstracts  International▼g87-02B.
■790    ▼a0262
■791    ▼aPh.D.
■792    ▼a2025
■793    ▼aEnglish
■85640▼uhttp://www.riss.kr/pdu/ddodLink.do?id=T17359418▼nKERIS▼z이  자료의  원문은  한국교육학술정보원에서  제공합니다.

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